J3_12DQ_005
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 12DQ|1|1A|U|272|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_12DQ_005 not in the Motif Atlas
- Homologous match to J3_7A0S_003
- Geometric discrepancy: 0.2457
- The information below is about J3_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97971.2
- Basepair signature
- cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
12DQ|1|1A|U|269
12DQ|1|1A|A|270
12DQ|1|1A|A|271
12DQ|1|1A|A|271|||A
12DQ|1|1A|C|271|||B
*
12DQ|1|1A|G|271|||V
12DQ|1|1A|G|271|||W
12DQ|1|1A|G|271|||X
12DQ|1|1A|U|271|||Y
12DQ|1|1A|C|271|||Z
12DQ|1|1A|G|272
12DQ|1|1A|U|272|||A
12DQ|1|1A|G|272|||B
*
12DQ|1|1A|C|366
12DQ|1|1A|G|370
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1I
- 50S ribosomal protein L9
Coloring options: