Motif J3_97971.2 Version J3_97971.2 of this group appears in releases 3.91 to 4.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 1-14 | 2-9 | 3-8 | 5-6 | 9-10 | 10-12 | 10-13 | 12-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9DFE_005 | 9DFE | 0.1872 | 1 | 1A | LSU rRNA | U | 269 | A | 270 | A | 271 | A | 271|||A | C | 271|||B | * | G | 271|||V | G | 271|||W | G | 271|||X | U | 271|||Y | C | 271|||Z | G | 272 | G | 272|||B | * | C | 366 | G | 370 | cWW | tHW | tHS | cWW | ncSs | cWW | ||
| 2 | J3_4WF9_022 | 4WF9 | 0.0000 | 1 | X | LSU rRNA | C | 272 | A | 273 | A | 274 | A | 275 | C | 276 | * | G | 295 | G | 296 | G | 297 | U | 298 | U | 299 | G | 300 | A | 302 | * | U | 415 | G | 416 | cWW | tHW | ntHS | cWW | cSH | tWS | ncWW | |
| 3 | J3_7A0S_003 | 7A0S | 0.1995 | 1 | X | LSU rRNA | C | 246 | A | 247 | A | 248 | A | 249 | C | 250 | * | G | 269 | G | 270 | G | 271 | U | 272 | U | 273 | G | 274 | A | 276 | * | U | 382 | G | 383 | cWW | tHW | tHS | cWW | ncSH | ntWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAC*GGGUUGUA*UG | 2 |
| UAAAC*GGGUCGUG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GGUUGU* | 2 |
| AAA*GGUCGU* | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
- Heat map statistics
- Min 0.19 | Avg 0.14 | Max 0.24
Coloring options: