J3_12DQ_009

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DQ_009 not in the Motif Atlas

Homologous match to J3_1MMS_002

Geometric discrepancy: 0.2364

The information below is about J3_1MMS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.2

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

4

Unit IDs

12DQ|1|1A|G|1055
12DQ|1|1A|G|1056
12DQ|1|1A|A|1057
*
12DQ|1|1A|U|1081
12DQ|1|1A|U|1082
12DQ|1|1A|U|1083
12DQ|1|1A|A|1084
12DQ|1|1A|A|1085
12DQ|1|1A|A|1086
12DQ|1|1A|G|1087
*
12DQ|1|1A|C|1102
12DQ|1|1A|A|1103
12DQ|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36