J3_12DQ_010

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

12DQ|1|1A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DQ_010 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.0953

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

12DQ|1|1A|C|1298
12DQ|1|1A|G|1299
12DQ|1|1A|U|1300
12DQ|1|1A|A|1301
12DQ|1|1A|A|1302
12DQ|1|1A|G|1303
*
12DQ|1|1A|C|1625
12DQ|1|1A|G|1626
12DQ|1|1A|G|1627
*
12DQ|1|1A|U|1639
12DQ|1|1A|C|1640
12DQ|1|1A|A|1641
12DQ|1|1A|G|1642

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains