J3_12DQ_012

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

12DQ|1|1A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DQ_012 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1812

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.4

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

11

Unit IDs

12DQ|1|1A|G|1344
12DQ|1|1A|C|1345
12DQ|1|1A|G|1346
12DQ|1|1A|G|1347
12DQ|1|1A|G|1348
12DQ|1|1A|A|1349
12DQ|1|1A|C|1350
*
12DQ|1|1A|G|1381
12DQ|1|1A|G|1382
12DQ|1|1A|C|1383
12DQ|1|1A|A|1384
12DQ|1|1A|G|1385
*
12DQ|1|1A|C|1402
12DQ|1|1A|C|1403

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23