J3_12DQ_028
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_12DQ_028 not in the Motif Atlas
- Homologous match to J3_8B0X_006
- Geometric discrepancy: 0.1028
- The information below is about J3_8B0X_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
12DQ|1|1a|U|943
12DQ|1|1a|G|944
12DQ|1|1a|G|945
12DQ|1|1a|A|946
*
12DQ|1|1a|U|1235
12DQ|1|1a|A|1236
12DQ|1|1a|C|1237
*
12DQ|1|1a|G|1337
12DQ|1|1a|G|1338
12DQ|1|1a|A|1339
12DQ|1|1a|A|1340
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1i
- 30S ribosomal protein S9
- Chain 1m
- 30S ribosomal protein S13
- Chain 1u
- 30S ribosomal protein Thx
- Chain 1y
- Ribosome-associated inhibitor A
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