J3_12DQ_042

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

12DQ|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DQ_042 not in the Motif Atlas

Homologous match to J3_8B0X_034

Geometric discrepancy: 0.1193

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

12DQ|1|2A|C|297
12DQ|1|2A|G|298
12DQ|1|2A|A|299
12DQ|1|2A|A|300
12DQ|1|2A|G|301
*
12DQ|1|2A|C|316
12DQ|1|2A|G|317
12DQ|1|2A|C|318
12DQ|1|2A|C|319
12DQ|1|2A|A|320
12DQ|1|2A|G|321
12DQ|1|2A|A|322
12DQ|1|2A|G|323
12DQ|1|2A|A|324
12DQ|1|2A|G|325
*
12DQ|1|2A|C|337
12DQ|1|2A|G|338
12DQ|1|2A|U|339
12DQ|1|2A|A|340
12DQ|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24