J3_8B0X_034

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8B0X|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B0X_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0347

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8B0X|1|a|G|297
8B0X|1|a|G|298
8B0X|1|a|A|299
8B0X|1|a|A|300
8B0X|1|a|G|301
*
8B0X|1|a|C|316
8B0X|1|a|G|317
8B0X|1|a|C|318
8B0X|1|a|G|319
8B0X|1|a|A|320
8B0X|1|a|U|321
8B0X|1|a|A|322
8B0X|1|a|C|323
8B0X|1|a|A|324
8B0X|1|a|G|325
*
8B0X|1|a|C|337
8B0X|1|a|G|338
8B0X|1|a|U|339
8B0X|1|a|A|340
8B0X|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24