J3_12DQ_049

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DQ_049 not in the Motif Atlas

Homologous match to J3_8B0X_035

Geometric discrepancy: 0.099

The information below is about J3_8B0X_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

12DQ|1|2A|G|1424
12DQ|1|2A|G|1425
12DQ|1|2A|G|1426
12DQ|1|2A|A|1427
12DQ|1|2A|C|1428
12DQ|1|2A|G|1429
*
12DQ|1|2A|C|1564
12DQ|1|2A|C|1565
*
12DQ|1|2A|G|1568
12DQ|1|2A|A|1569
12DQ|1|2A|A|1570
12DQ|1|2A|A|1571
12DQ|1|2A|A|1572
12DQ|1|2A|G|1573
12DQ|1|2A|C|1574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2