J3_1DK1_002

3D structure

PDB id

1DK1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGG*CUAGA*UGACG

Length

13 nucleotides

Bulged bases

1DK1|1|B|A|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1DK1_002 not in the Motif Atlas

Geometric match to J3_1KUQ_002

Geometric discrepancy: 0.0662

The information below is about J3_1KUQ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.6

Basepair signature

cWW-F-cWW-cWW-F-F-F-cWW

Number of instances in this motif group

6

Unit IDs

1DK1|1|B|C|4
1DK1|1|B|G|5
1DK1|1|B|G|6
*
1DK1|1|B|C|15
1DK1|1|B|U|16
1DK1|1|B|A|17
1DK1|1|B|G|18
1DK1|1|B|A|19
*
1DK1|1|B|U|50
1DK1|1|B|G|51
1DK1|1|B|A|52
1DK1|1|B|C|53
1DK1|1|B|G|54

Current chains

Chain B

RRNA FRAGMENT

Nearby chains

Chain A

30S RIBOSOMAL PROTEIN S15