J3_1FFK_003
3D structure
- PDB id
- 1FFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- ACAA*UGUUAG*CGUGAU
- Length
- 16 nucleotides
- Bulged bases
- 1FFK|1|0|U|825, 1FFK|1|0|A|857
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1FFK_003 not in the Motif Atlas
- Geometric match to J3_5TBW_005
- Geometric discrepancy: 0.2621
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
1FFK|1|0|A|788
1FFK|1|0|C|789
1FFK|1|0|A|790
1FFK|1|0|A|791
*
1FFK|1|0|U|823
1FFK|1|0|G|824
1FFK|1|0|U|825
1FFK|1|0|U|826
1FFK|1|0|A|827
1FFK|1|0|G|828
*
1FFK|1|0|C|853
1FFK|1|0|G|854
1FFK|1|0|U|855
1FFK|1|0|G|856
1FFK|1|0|A|857
1FFK|1|0|U|858
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain A
- RIBOSOMAL PROTEIN L2
- Chain M
- RIBOSOMAL PROTEIN L19
Coloring options: