J3_1FFK_005

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

1FFK|1|0|G|1683, 1FFK|1|0|A|1684

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FFK_005 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.1008

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1FFK|1|0|U|1412
1FFK|1|0|A|1413
1FFK|1|0|A|1414
1FFK|1|0|G|1415
*
1FFK|1|0|C|1680
1FFK|1|0|G|1681
1FFK|1|0|A|1682
1FFK|1|0|G|1683
1FFK|1|0|A|1684
1FFK|1|0|A|1685
1FFK|1|0|C|1686
*
1FFK|1|0|G|1695
1FFK|1|0|U|1696
1FFK|1|0|G|1697

Current chains

Chain 0

23S RRNA

Nearby chains

Chain X

RIBOSOMAL PROTEIN L37E

Chain Y

RIBOSOMAL PROTEIN L39E