J3_1FFK_009
3D structure
- PDB id
- 1FFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CCACAG*CGUUC*GUUCG
- Length
- 16 nucleotides
- Bulged bases
- 1FFK|1|9|C|12, 1FFK|1|9|C|113
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1FFK_009 not in the Motif Atlas
- Homologous match to J3_4V9F_010
- Geometric discrepancy: 0.0422
- The information below is about J3_4V9F_010
- Detailed Annotation
- 5S rRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89737.1
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
1FFK|1|9|C|9
1FFK|1|9|C|10
1FFK|1|9|A|11
1FFK|1|9|C|12
1FFK|1|9|A|13
1FFK|1|9|G|14
*
1FFK|1|9|C|67
1FFK|1|9|G|68
1FFK|1|9|U|69
1FFK|1|9|U|70
1FFK|1|9|C|71
*
1FFK|1|9|G|110
1FFK|1|9|U|111
1FFK|1|9|U|112
1FFK|1|9|C|113
1FFK|1|9|G|114
Current chains
- Chain 9
- 5S RRNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- RIBOSOMAL PROTEIN L18
- Chain N
- RIBOSOMAL PROTEIN L21E
Coloring options: