J3_1FFZ_001

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCUG*CUCAC*GGACACC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FFZ_001 not in the Motif Atlas

Homologous match to J3_4V9F_007

Geometric discrepancy: 0.0748

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1FFZ|1|A|G|2131
1FFZ|1|A|C|2132
1FFZ|1|A|U|2133
1FFZ|1|A|G|2134
*
1FFZ|1|A|C|2241
1FFZ|1|A|U|2242
1FFZ|1|A|C|2243
1FFZ|1|A|A|2244
1FFZ|1|A|C|2245
*
1FFZ|1|A|G|2256
1FFZ|1|A|G|2257
1FFZ|1|A|A|2258
1FFZ|1|A|C|2259
1FFZ|1|A|A|2260
1FFZ|1|A|C|2261
1FFZ|1|A|C|2262

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains