Motif J3_86017.1 Version J3_86017.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-13 | 4-5 | 6-11 | 7-10 | 8-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4V9F_007 | 4V9F | 0.0000 | 1 | 0 | LSU rRNA | G | 2131 | C | 2132 | U | 2133 | G | 2134 | * | C | 2241 | U | 2242 | A | 2244 | C | 2245 | * | G | 2256 | G | 2257 | A | 2258 | C | 2259 | A | 2260 | C | 2261 | C | 2262 | cWW | cWB | tHH | cWW | tWH | tHS | cWW |
| 2 | J3_9AXU_019 | 9AXU | 0.1576 | 1 | 2 | LSU rRNA | A | 2520 | U | 2521 | U | 2522 | G | 2523 | * | C | 2608 | U | 2609 | A | 2611 | A | 2612 | * | U | 2686 | G | 2687 | A | 2688 | C | 2689 | A | 2690 | U | 2691 | U | 2692 | cWW | ncwW | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUG*CUCAC*GGACACC | 1 |
| AUUG*CUUAA*UGACAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CU*UCA*GACAC | 1 |
| UU*UUA*GACAU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Heat map statistics
- Min 0.16 | Avg 0.08 | Max 0.16
Coloring options: