J3_1FG0_001

3D structure

PDB id

1FG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUND

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUG*CUCAC*GGACACC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FG0_001 not in the Motif Atlas

Homologous match to J3_4V9F_007

Geometric discrepancy: 0.0562

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97609.1

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-F-cWW-F

Number of instances in this motif group

1

Unit IDs

1FG0|1|A|G|2131
1FG0|1|A|C|2132
1FG0|1|A|U|2133
1FG0|1|A|G|2134
*
1FG0|1|A|C|2241
1FG0|1|A|U|2242
1FG0|1|A|C|2243
1FG0|1|A|A|2244
1FG0|1|A|C|2245
*
1FG0|1|A|G|2256
1FG0|1|A|G|2257
1FG0|1|A|A|2258
1FG0|1|A|C|2259
1FG0|1|A|A|2260
1FG0|1|A|C|2261
1FG0|1|A|C|2262

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains