J3_1FJG_003

3D structure

PDB id

1FJG (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FJG_003 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0431

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1FJG|1|A|U|943
1FJG|1|A|G|944
1FJG|1|A|G|945
1FJG|1|A|A|946
*
1FJG|1|A|U|1235
1FJG|1|A|A|1236
1FJG|1|A|C|1237
*
1FJG|1|A|G|1337
1FJG|1|A|G|1338
1FJG|1|A|A|1339
1FJG|1|A|A|1340

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9

Chain M

30S RIBOSOMAL PROTEIN S13

Chain V

30S RIBOSOMAL PROTEIN THX