3D structure

PDB id
1HC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GGA*UUUAAAG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.1
Basepair signature
cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
6

Unit IDs

1HC8|1|C|G|105
1HC8|1|C|G|106
1HC8|1|C|A|107
*
1HC8|1|C|U|131
1HC8|1|C|U|132
1HC8|1|C|U|133
1HC8|1|C|A|134
1HC8|1|C|A|135
1HC8|1|C|A|136
1HC8|1|C|G|137
*
1HC8|1|C|C|152
1HC8|1|C|A|153
1HC8|1|C|C|154

Current chains

Chain C
58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN

Nearby chains

Chain A
RIBOSOMAL PROTEIN L11

Coloring options:

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