Motif J3_28621.1 Version J3_28621.1 of this group appears in releases 3.2 to 3.26
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-13 | 2-6 | 5-10 | 5-11 | 7-8 | 9-12 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4V9F_004 | 4V9F | 0.0000 | 0 | 0 | LSU rRNA | U | 1185 | C | 1186 | U | 1187 | A | 1188 | A | 1189 | G | 1190 | A | 1191 | * | U | 1206 | A | 1207 | C | 1208 | * | G | 1159 | G | 1160 | A | 1161 | cWW | tWW | tSs | cWW | cWW | ||
| 2 | J3_1HC8_001 | 1HC8 | 0.1242 | 0 | C | LSU rRNA | U | 131 | U | 132 | U | 133 | A | 134 | A | 135 | A | 136 | G | 137 | * | C | 152 | A | 153 | C | 154 | * | G | 105 | G | 106 | A | 107 | cWW | tWW | ncSs | tSs | cWW | tHS | cWW |
| 3 | J3_1MMS_001 | 1MMS | 0.1265 | 0 | C | 23S RIBOSOMAL RNA | U | 1081 | U | 1082 | U | 1083 | A | 1084 | A | 1085 | A | 1086 | G | 1087 | * | C | 1102 | A | 1103 | C | 1104 | * | G | 1055 | G | 1056 | A | 1057 | cWW | tWW | ncSs | tSs | cWW | tHS | cWW |
| 4 | J3_5D8H_001 | 5D8H | 0.1280 | 0 | A | LSU rRNA | U | 1191 | U | 1192 | U | 1193 | A | 1194 | A | 1195 | A | 1196 | G | 1197 | * | C | 1212 | A | 1213 | C | 1214 | * | G | 1165 | G | 1166 | A | 1167 | cWW | tWW | ncSs | tSs | cWW | tHS | cWW |
| 5 | J3_5J7L_040 | 5J7L | 0.1732 | 0 | DA | LSU rRNA | U | 1081 | U | 1082 | U | 1083 | A | 1084 | A | 1085 | A | 1086 | G | 1087 | * | C | 1102 | A | 1103 | C | 1104 | * | G | 1055 | G | 1056 | A | 1057 | cWW | tWW | cSs | tSs | cWW | tHS | cWW |
| 6 | J3_5TBW_007 | 5TBW | 0.2219 | 0 | 1 | LSU rRNA | G | 1256 | C | 1257 | U | 1258 | A | 1259 | A | 1260 | G | 1261 | G | 1262 | * | C | 1277 | A | 1278 | C | 1279 | * | G | 1230 | A | 1231 | C | 1232 | ncWW | tWW | ncSs | ntSs | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGA*UUUAAAG*CAC | 4 |
| GGA*UCUAAGA*UAC | 1 |
| GAC*GCUAAGG*CAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*UUAAA*A | 4 |
| G*CUAAG*A | 1 |
| A*CUAAG*A | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
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- (6)
- Basepair signature
- cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.13 | Max 0.24
Coloring options: