3D structure

PDB id
1HR0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1HR0_005 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.1057
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

1HR0|1|A|C|990
1HR0|1|A|U|991
1HR0|1|A|U|992
1HR0|1|A|G|993
*
1HR0|1|A|C|1045
1HR0|1|A|A|1046
1HR0|1|A|G|1047
*
1HR0|1|A|C|1210
1HR0|1|A|U|1211
1HR0|1|A|U|1212
1HR0|1|A|A|1213
1HR0|1|A|C|1214
1HR0|1|A|G|1215

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain N
30S RIBOSOMAL PROTEIN S14

Coloring options:


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