J3_1I96_018
3D structure
- PDB id
- 1I96 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4.2 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 1I96|1|A|A|1164
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1I96_018 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.14
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
1I96|1|A|C|1098
1I96|1|A|G|1099
1I96|1|A|C|1100
*
1I96|1|A|G|1137
1I96|1|A|G|1138
1I96|1|A|A|1139
1I96|1|A|C|1140
1I96|1|A|U|1141
1I96|1|A|G|1142
1I96|1|A|C|1143
*
1I96|1|A|G|1156
1I96|1|A|A|1157
1I96|1|A|G|1158
1I96|1|A|G|1159
1I96|1|A|A|1160
1I96|1|A|A|1161
1I96|1|A|G|1162
1I96|1|A|G|1163
1I96|1|A|A|1164
1I96|1|A|G|1165
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain B
- 30S RIBOSOMAL PROTEIN S2
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain N
- 30S RIBOSOMAL PROTEIN S14
Coloring options: