Motif J3_40706.2 Version J3_40706.2 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-19 | 3-4 | 5-15 | 6-14 | 7-17 | 8-9 | 8-10 | 9-12 | 9-18 | 10-11 | 12-18 | 13-17 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4LFB_018 | 4LFB | 0.1058 | 1 | A | SSU rRNA | C | 1116 | G | 1117 | C | 1118 | * | G | 1155 | G | 1156 | A | 1157 | C | 1158 | U | 1159 | G | 1160 | C | 1161 | * | G | 1175 | A | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | G | 1181 | G | 1182 | G | 1184 | cWW | cWW | tSW | tWS | cWW | cSH | cWW | cHW | cWW | ncHH | ntWH | |
| 2 | J3_8B0X_031 | 8B0X | 0.0000 | 1 | A | SSU rRNA | U | 1116 | A | 1117 | U | 1118 | * | A | 1155 | G | 1156 | A | 1157 | C | 1158 | U | 1159 | G | 1160 | C | 1161 | * | G | 1175 | A | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | G | 1181 | G | 1182 | G | 1184 | cWW | cWW | tSW | tWS | cWW | cSH | cWW | cHW | cWW | ncHH | tWH | |
| 3 | J3_9H3G_042 | 9H3G | 0.4918 | 1 | h1 | SSU rRNA | A | 1337 | G | 1338 | C | 1339 | * | G | 1389 | G | 1390 | A | 1391 | C | 1392 | U | 1393 | A | 1394 | U | 1395 | * | A | 1409 | A | 1410 | G | 1411 | G | 1412 | A | 1413 | A | 1414 | G | 1415 | U | 1416 | U | 1418 | cWW | cWW | tSW | tWS | cWW | ncSH | cwW | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGC*GGACUGC*GAGGAAGGAG | 1 |
| UAU*AGACUGC*GAGGAAGGUG | 1 |
| AGC*GGACUAU*AAGGAAGUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GACUG*AGGAAGGA | 1 |
| A*GACUG*AGGAAGGU | 1 |
| G*GACUA*AGGAAGUU | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.24 | Max 0.50
Coloring options: