J3_1IBK_016

3D structure

PDB id

1IBK (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.31 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

1IBK|1|A|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1IBK_016 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.0917

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1IBK|1|A|C|1116
1IBK|1|A|G|1117
1IBK|1|A|C|1118
*
1IBK|1|A|G|1155
1IBK|1|A|G|1156
1IBK|1|A|A|1157
1IBK|1|A|C|1158
1IBK|1|A|U|1159
1IBK|1|A|G|1160
1IBK|1|A|C|1161
*
1IBK|1|A|G|1175
1IBK|1|A|A|1176
1IBK|1|A|G|1177
1IBK|1|A|G|1178
1IBK|1|A|A|1179
1IBK|1|A|A|1180
1IBK|1|A|G|1181
1IBK|1|A|G|1182
1IBK|1|A|A|1183
1IBK|1|A|G|1184

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain G

30S RIBOSOMAL PROTEIN S7

Chain I

30S RIBOSOMAL PROTEIN S9

Chain N

30S RIBOSOMAL PROTEIN S14