3D structure

PDB id
1IBL (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.11 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1IBL_003 not in the Motif Atlas
Homologous match to J3_4LFB_003
Geometric discrepancy: 0.0587
The information below is about J3_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.4
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

1IBL|1|A|U|943
1IBL|1|A|G|944
1IBL|1|A|G|945
1IBL|1|A|A|946
*
1IBL|1|A|U|1235
1IBL|1|A|A|1236
1IBL|1|A|C|1237
*
1IBL|1|A|G|1337
1IBL|1|A|G|1338
1IBL|1|A|A|1339
1IBL|1|A|A|1340

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain I
30S RIBOSOMAL PROTEIN S9
Chain M
30S RIBOSOMAL PROTEIN S13
Chain V
30S RIBOSOMAL PROTEIN THX

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1591 s