3D structure

PDB id
1IBL (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.11 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
1IBL|1|A|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1IBL_009 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.0821
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

1IBL|1|A|C|1237
1IBL|1|A|A|1238
1IBL|1|A|A|1239
1IBL|1|A|U|1240
1IBL|1|A|G|1241
*
1IBL|1|A|C|1296
1IBL|1|A|C|1297
1IBL|1|A|C|1298
1IBL|1|A|A|1299
1IBL|1|A|G|1300
1IBL|1|A|U|1301
1IBL|1|A|U|1302
1IBL|1|A|C|1303
*
1IBL|1|A|G|1334
1IBL|1|A|C|1335
1IBL|1|A|C|1336
1IBL|1|A|G|1337

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain G
30S RIBOSOMAL PROTEIN S7
Chain M
30S RIBOSOMAL PROTEIN S13
Chain V
30S RIBOSOMAL PROTEIN THX

Coloring options:


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