J3_1IBM_005
3D structure
- PDB id
- 1IBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.31 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- 1IBM|1|A|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1IBM_005 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.1209
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84394.1
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
1IBM|1|A|C|990
1IBM|1|A|U|991
1IBM|1|A|U|992
1IBM|1|A|G|993
*
1IBM|1|A|C|1045
1IBM|1|A|A|1046
1IBM|1|A|G|1047
*
1IBM|1|A|C|1210
1IBM|1|A|U|1211
1IBM|1|A|U|1212
1IBM|1|A|A|1213
1IBM|1|A|C|1214
1IBM|1|A|G|1215
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain N
- 30S RIBOSOMAL PROTEIN S14
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