J3_1IBM_016
3D structure
- PDB id
- 1IBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.31 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 1IBM|1|A|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1IBM_016 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.0908
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
1IBM|1|A|C|1116
1IBM|1|A|G|1117
1IBM|1|A|C|1118
*
1IBM|1|A|G|1155
1IBM|1|A|G|1156
1IBM|1|A|A|1157
1IBM|1|A|C|1158
1IBM|1|A|U|1159
1IBM|1|A|G|1160
1IBM|1|A|C|1161
*
1IBM|1|A|G|1175
1IBM|1|A|A|1176
1IBM|1|A|G|1177
1IBM|1|A|G|1178
1IBM|1|A|A|1179
1IBM|1|A|A|1180
1IBM|1|A|G|1181
1IBM|1|A|G|1182
1IBM|1|A|A|1183
1IBM|1|A|G|1184
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain B
- 30S RIBOSOMAL PROTEIN S2
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain N
- 30S RIBOSOMAL PROTEIN S14
Coloring options: