J3_1J5A_006

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUG*CGGCCGUAACUAUAACGGUCCUAAGGUAG*CGAAAG

Length

38 nucleotides

Bulged bases

1J5A|1|A|A|1895, 1J5A|1|A|C|1897, 1J5A|1|A|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1J5A|1|A|C|1825
1J5A|1|A|U|1826
1J5A|1|A|G|1827
*
1J5A|1|A|C|1888
1J5A|1|A|G|1889
1J5A|1|A|G|1890
1J5A|1|A|C|1891
1J5A|1|A|C|1892
1J5A|1|A|G|1893
1J5A|1|A|U|1894
1J5A|1|A|A|1895
1J5A|1|A|A|1896
1J5A|1|A|C|1897
1J5A|1|A|U|1898
1J5A|1|A|A|1899
1J5A|1|A|U|1900
1J5A|1|A|A|1901
1J5A|1|A|A|1902
1J5A|1|A|C|1903
1J5A|1|A|G|1904
1J5A|1|A|G|1905
1J5A|1|A|U|1906
1J5A|1|A|C|1907
1J5A|1|A|C|1908
1J5A|1|A|U|1909
1J5A|1|A|A|1910
1J5A|1|A|A|1911
1J5A|1|A|G|1912
1J5A|1|A|G|1913
1J5A|1|A|U|1914
1J5A|1|A|A|1915
1J5A|1|A|G|1916
*
1J5A|1|A|C|1950
1J5A|1|A|G|1951
1J5A|1|A|A|1952
1J5A|1|A|A|1953
1J5A|1|A|A|1954
1J5A|1|A|G|1955

Current chains

Chain A

23S RRNA

Nearby chains