J3_1J5A_010

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AC*GAAAAGC*GAUGU

Length

14 nucleotides

Bulged bases

1J5A|1|A|A|72, 1J5A|1|A|A|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1J5A_010 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.3719

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

1J5A|1|A|A|55
1J5A|1|A|C|56
*
1J5A|1|A|G|69
1J5A|1|A|A|70
1J5A|1|A|A|71
1J5A|1|A|A|72
1J5A|1|A|A|73
1J5A|1|A|G|74
1J5A|1|A|C|75
*
1J5A|1|A|G|108
1J5A|1|A|A|109
1J5A|1|A|U|110
1J5A|1|A|G|111
1J5A|1|A|U|112

Current chains

Chain A

23S RRNA

Nearby chains