J3_1J5A_012
3D structure
- PDB id
- 1J5A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAGAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 1J5A|1|A|G|514, 1J5A|1|A|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1J5A_012 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.2975
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
1J5A|1|A|G|30
1J5A|1|A|C|31
*
1J5A|1|A|G|485
1J5A|1|A|U|486
1J5A|1|A|G|487
1J5A|1|A|A|488
1J5A|1|A|A|489
1J5A|1|A|A|490
1J5A|1|A|A|491
1J5A|1|A|G|492
1J5A|1|A|A|493
1J5A|1|A|A|494
1J5A|1|A|C|495
*
1J5A|1|A|G|506
1J5A|1|A|A|507
1J5A|1|A|G|508
1J5A|1|A|U|509
1J5A|1|A|G|510
1J5A|1|A|A|511
1J5A|1|A|A|512
1J5A|1|A|A|513
1J5A|1|A|G|514
1J5A|1|A|A|515
1J5A|1|A|G|516
1J5A|1|A|A|517
1J5A|1|A|A|518
1J5A|1|A|C|519
1J5A|1|A|C|520
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain L
- RIBOSOMAL PROTEIN L22
Coloring options: