J3_1J5A_015

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAG*CACCUCAGAA*UGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1J5A_015 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.137

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

1J5A|1|A|C|308
1J5A|1|A|G|309
1J5A|1|A|A|310
1J5A|1|A|A|311
1J5A|1|A|G|312
*
1J5A|1|A|C|327
1J5A|1|A|A|328
1J5A|1|A|C|329
1J5A|1|A|C|330
1J5A|1|A|U|331
1J5A|1|A|C|332
1J5A|1|A|A|333
1J5A|1|A|G|334
1J5A|1|A|A|335
1J5A|1|A|A|336
*
1J5A|1|A|U|348
1J5A|1|A|G|349
1J5A|1|A|U|350
1J5A|1|A|A|351
1J5A|1|A|G|352

Current chains

Chain A

23S RRNA

Nearby chains

Chain K

RIBOSOMAL PROTEIN L4