J3_1J5A_017

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAGCUA*UAGGA*UAACCGAA

Length

20 nucleotides

Bulged bases

1J5A|1|A|G|699, 1J5A|1|A|A|802, 1J5A|1|A|C|803, 1J5A|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1J5A|1|A|U|696
1J5A|1|A|G|697
1J5A|1|A|A|698
1J5A|1|A|G|699
1J5A|1|A|C|700
1J5A|1|A|U|701
1J5A|1|A|A|702
*
1J5A|1|A|U|786
1J5A|1|A|A|787
1J5A|1|A|G|788
1J5A|1|A|G|789
1J5A|1|A|A|790
*
1J5A|1|A|U|800
1J5A|1|A|A|801
1J5A|1|A|A|802
1J5A|1|A|C|803
1J5A|1|A|C|804
1J5A|1|A|G|805
1J5A|1|A|A|806
1J5A|1|A|A|807

Current chains

Chain A

23S RRNA

Nearby chains

Chain K

RIBOSOMAL PROTEIN L4

Chain L

RIBOSOMAL PROTEIN L22