J3_1J5A_018

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGA*UUCAAAGAGUGC*GCUCAC

Length

21 nucleotides

Bulged bases

1J5A|1|A|G|1067, 1J5A|1|A|A|1099, 1J5A|1|A|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1J5A|1|A|G|1066
1J5A|1|A|G|1067
1J5A|1|A|A|1068
*
1J5A|1|A|U|1092
1J5A|1|A|U|1093
1J5A|1|A|C|1094
1J5A|1|A|A|1095
1J5A|1|A|A|1096
1J5A|1|A|A|1097
1J5A|1|A|G|1098
1J5A|1|A|A|1099
1J5A|1|A|G|1100
1J5A|1|A|U|1101
1J5A|1|A|G|1102
1J5A|1|A|C|1103
*
1J5A|1|A|G|1110
1J5A|1|A|C|1111
1J5A|1|A|U|1112
1J5A|1|A|C|1113
1J5A|1|A|A|1114
1J5A|1|A|C|1115

Current chains

Chain A

23S RRNA

Nearby chains