J3_1J5A_020

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGGAGUGAUGGAGGGACG*CC*GAAAAGCUUCUAAACGUUGAAA

Length

42 nucleotides

Bulged bases

1J5A|1|A|C|1442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1J5A|1|A|U|1426
1J5A|1|A|G|1427
1J5A|1|A|G|1428
1J5A|1|A|A|1429
1J5A|1|A|G|1430
1J5A|1|A|U|1431
1J5A|1|A|G|1432
1J5A|1|A|A|1433
1J5A|1|A|U|1434
1J5A|1|A|G|1435
1J5A|1|A|G|1436
1J5A|1|A|A|1437
1J5A|1|A|G|1438
1J5A|1|A|G|1439
1J5A|1|A|G|1440
1J5A|1|A|A|1441
1J5A|1|A|C|1442
1J5A|1|A|G|1443
*
1J5A|1|A|C|1580
1J5A|1|A|C|1581
*
1J5A|1|A|G|1584
1J5A|1|A|A|1585
1J5A|1|A|A|1586
1J5A|1|A|A|1587
1J5A|1|A|A|1588
1J5A|1|A|G|1589
1J5A|1|A|C|1590
1J5A|1|A|U|1591
1J5A|1|A|U|1592
1J5A|1|A|C|1593
1J5A|1|A|U|1594
1J5A|1|A|A|1595
1J5A|1|A|A|1596
1J5A|1|A|A|1597
1J5A|1|A|C|1598
1J5A|1|A|G|1599
1J5A|1|A|U|1600
1J5A|1|A|U|1601
1J5A|1|A|G|1602
1J5A|1|A|A|1603
1J5A|1|A|A|1604
1J5A|1|A|A|1605

Current chains

Chain A

23S RRNA

Nearby chains