J3_1J5A_021

3D structure

PDB id

1J5A (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUCAA*UGUAGAG*UAGAAG

Length

18 nucleotides

Bulged bases

1J5A|1|A|U|2298, 1J5A|1|A|G|2313, 1J5A|1|A|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1J5A_021 not in the Motif Atlas

Homologous match to J3_5J7L_071

Geometric discrepancy: 0.5465

The information below is about J3_5J7L_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44961.1

Basepair signature

cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F

Number of instances in this motif group

1

Unit IDs

1J5A|1|A|C|2274
1J5A|1|A|U|2275
1J5A|1|A|C|2276
1J5A|1|A|A|2277
1J5A|1|A|A|2278
*
1J5A|1|A|U|2296
1J5A|1|A|G|2297
1J5A|1|A|U|2298
1J5A|1|A|A|2299
1J5A|1|A|G|2300
1J5A|1|A|A|2301
1J5A|1|A|G|2302
*
1J5A|1|A|U|2311
1J5A|1|A|A|2312
1J5A|1|A|G|2313
1J5A|1|A|A|2314
1J5A|1|A|A|2315
1J5A|1|A|G|2316

Current chains

Chain A

23S RRNA

Nearby chains