J3_1JJ2_006

3D structure

PDB id

1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

1JJ2|1|0|G|1683, 1JJ2|1|0|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JJ2_006 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.0184

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1JJ2|1|0|U|1412
1JJ2|1|0|A|1413
1JJ2|1|0|A|1414
1JJ2|1|0|G|1415
*
1JJ2|1|0|C|1680
1JJ2|1|0|G|1681
1JJ2|1|0|A|1682
1JJ2|1|0|G|1683
1JJ2|1|0|A|1684
1JJ2|1|0|A|1685
1JJ2|1|0|C|1686
*
1JJ2|1|0|G|1695
1JJ2|1|0|U|1696
1JJ2|1|0|G|1697

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L39E

Chain O

RIBOSOMAL PROTEIN L19E

Chain Z

RIBOSOMAL PROTEIN L37E