J3_1JJ2_014
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 1JJ2|1|0|U|68, 1JJ2|1|0|A|70
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1JJ2_014 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.0281
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
1JJ2|1|0|A|52
1JJ2|1|0|C|53
*
1JJ2|1|0|G|66
1JJ2|1|0|A|67
1JJ2|1|0|U|68
1JJ2|1|0|A|69
1JJ2|1|0|A|70
1JJ2|1|0|G|71
1JJ2|1|0|C|72
*
1JJ2|1|0|G|105
1JJ2|1|0|A|106
1JJ2|1|0|U|107
1JJ2|1|0|U|108
1JJ2|1|0|U|109
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain 1
- RIBOSOMAL PROTEIN L39E
- Chain R
- RIBOSOMAL PROTEIN L23
- Chain U
- RIBOSOMAL PROTEIN L29
- Chain Z
- RIBOSOMAL PROTEIN L37E
Coloring options: