J3_1JJ2_019
3D structure
- PDB id
- 1JJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fully Refined Crystal Structure of the Haloarcula marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CC*GUCGAU*AACAG
- Length
- 13 nucleotides
- Bulged bases
- 1JJ2|1|0|C|2850, 1JJ2|1|0|A|2852
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1JJ2_019 not in the Motif Atlas
- Homologous match to J3_4V9F_019
- Geometric discrepancy: 0.0793
- The information below is about J3_4V9F_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
1JJ2|1|0|C|2831
1JJ2|1|0|C|2832
*
1JJ2|1|0|G|2848
1JJ2|1|0|U|2849
1JJ2|1|0|C|2850
1JJ2|1|0|G|2851
1JJ2|1|0|A|2852
1JJ2|1|0|U|2853
*
1JJ2|1|0|A|2905
1JJ2|1|0|A|2906
1JJ2|1|0|C|2907
1JJ2|1|0|A|2908
1JJ2|1|0|G|2909
Current chains
- Chain 0
- 23S RRNA
Nearby chains
- Chain B
- RIBOSOMAL PROTEIN L3
- Chain Q
- RIBOSOMAL PROTEIN L22
- Chain W
- RIBOSOMAL PROTEIN L31E
Coloring options: