Motif J3_76911.2 Version J3_76911.2 of this group appears in releases 3.91 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-3 | 2-10 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4V9F_019 | 4V9F | 0.2752 | 2 | 0 | LSU rRNA | C | 2831 | C | 2832 | * | G | 2848 | U | 2849 | G | 2851 | U | 2853 | * | A | 2905 | A | 2906 | C | 2907 | A | 2908 | G | 2909 | cWW | cWW | cSW | tSH | cWW |
| 2 | J3_7A0S_013 | 7A0S | 0.1905 | 2 | X | LSU rRNA | U | 2789 | C | 2790 | * | G | 2806 | U | 2807 | A | 2809 | G | 2811 | * | C | 2857 | A | 2858 | U | 2859 | C | 2860 | A | 2861 | cWW | cWW | tSH | cWW | |
| 3 | J3_4WF9_021 | 4WF9 | 0.1817 | 2 | X | LSU rRNA | C | 2834 | C | 2835 | * | G | 2851 | U | 2852 | A | 2854 | U | 2856 | * | A | 2902 | A | 2903 | U | 2904 | C | 2905 | G | 2906 | cWW | cWW | tSH | cWW | |
| 4 | J3_9DFE_019 | 9DFE | 0.0000 | 2 | 1A | LSU rRNA | C | 2814 | C | 2815 | * | G | 2831 | U | 2832 | G | 2834 | U | 2836 | * | A | 2882 | A | 2883 | U | 2884 | C | 2885 | G | 2886 | cWW | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GUCGAU*AACAG | 1 |
| UC*GUUAAG*CAUCA | 1 |
| CC*GUUAAU*AAUCG | 1 |
| CC*GUGGAU*AAUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *UUAA*AUC | 2 |
| *UCGA*ACA | 1 |
| *UGGA*AUC | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Heat map statistics
- Min 0.18 | Avg 0.18 | Max 0.31
Coloring options: