J3_1JZX_002

3D structure

PDB id

1JZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

1JZX|1|A|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JZX_002 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.2813

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1JZX|1|A|C|710
1JZX|1|A|C|711
1JZX|1|A|A|712
1JZX|1|A|G|713
*
1JZX|1|A|C|745
1JZX|1|A|G|746
1JZX|1|A|A|747
1JZX|1|A|A|748
1JZX|1|A|C|749
*
1JZX|1|A|G|773
1JZX|1|A|A|774
1JZX|1|A|U|775
1JZX|1|A|G|776
1JZX|1|A|A|777
1JZX|1|A|G|778

Current chains

Chain A

23S rRNA

Nearby chains