J3_1JZZ_002

3D structure

PDB id

1JZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

1JZZ|1|A|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1JZZ_002 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.2817

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1JZZ|1|A|C|710
1JZZ|1|A|C|711
1JZZ|1|A|A|712
1JZZ|1|A|G|713
*
1JZZ|1|A|C|745
1JZZ|1|A|G|746
1JZZ|1|A|A|747
1JZZ|1|A|A|748
1JZZ|1|A|C|749
*
1JZZ|1|A|G|773
1JZZ|1|A|A|774
1JZZ|1|A|U|775
1JZZ|1|A|G|776
1JZZ|1|A|A|777
1JZZ|1|A|G|778

Current chains

Chain A

23S rRNA

Nearby chains