J3_1K01_002

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

1K01|1|A|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1K01_002 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.2818

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

1K01|1|A|C|710
1K01|1|A|C|711
1K01|1|A|A|712
1K01|1|A|G|713
*
1K01|1|A|C|745
1K01|1|A|G|746
1K01|1|A|A|747
1K01|1|A|A|748
1K01|1|A|C|749
*
1K01|1|A|G|773
1K01|1|A|A|774
1K01|1|A|U|775
1K01|1|A|G|776
1K01|1|A|A|777
1K01|1|A|G|778

Current chains

Chain A

23S rRNA

Nearby chains