J3_1K01_009

3D structure

PDB id

1K01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1K01_009 not in the Motif Atlas

Geometric match to J3_7A0S_001

Geometric discrepancy: 0.1471

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

1K01|1|A|G|30
1K01|1|A|C|31
*
1K01|1|A|G|485
1K01|1|A|U|486
1K01|1|A|G|487
1K01|1|A|A|488
1K01|1|A|A|489
1K01|1|A|A|490
1K01|1|A|A|491
1K01|1|A|G|492
*
1K01|1|A|C|519
1K01|1|A|C|520

Current chains

Chain A

23S rRNA

Nearby chains