J3_1K8A_013

3D structure

PDB id

1K8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Carbomycin A bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUCG*CGAUAGUGAACAAGUAG*CGAACG

Length

27 nucleotides

Bulged bases

1K8A|1|A|C|31, 1K8A|1|A|U|454, 1K8A|1|A|A|462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1K8A_013 not in the Motif Atlas

Homologous match to J3_4V9F_013

Geometric discrepancy: 0.0313

The information below is about J3_4V9F_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

1K8A|1|A|C|29
1K8A|1|A|U|30
1K8A|1|A|C|31
1K8A|1|A|G|32
*
1K8A|1|A|C|451
1K8A|1|A|G|452
1K8A|1|A|A|453
1K8A|1|A|U|454
1K8A|1|A|A|455
1K8A|1|A|G|456
1K8A|1|A|U|457
1K8A|1|A|G|458
1K8A|1|A|A|459
1K8A|1|A|A|460
1K8A|1|A|C|461
1K8A|1|A|A|462
1K8A|1|A|A|463
1K8A|1|A|G|464
1K8A|1|A|U|465
1K8A|1|A|A|466
1K8A|1|A|G|467
*
1K8A|1|A|C|474
1K8A|1|A|G|475
1K8A|1|A|A|476
1K8A|1|A|A|477
1K8A|1|A|C|478
1K8A|1|A|G|479

Current chains

Chain A

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L37E

Chain 3

RIBOSOMAL PROTEIN L39E

Chain E

RIBOSOMAL PROTEIN L4

Chain U

RIBOSOMAL PROTEIN L24