J3_4V9F_013
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CUCG*CGAUAGUGAACAAGUAG*CGAACG
- Length
- 27 nucleotides
- Bulged bases
- 4V9F|1|0|C|31, 4V9F|1|0|U|454, 4V9F|1|0|A|462
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V9F|1|0|C|29
4V9F|1|0|U|30
4V9F|1|0|C|31
4V9F|1|0|G|32
*
4V9F|1|0|C|451
4V9F|1|0|G|452
4V9F|1|0|A|453
4V9F|1|0|U|454
4V9F|1|0|A|455
4V9F|1|0|G|456
4V9F|1|0|U|457
4V9F|1|0|G|458
4V9F|1|0|A|459
4V9F|1|0|A|460
4V9F|1|0|C|461
4V9F|1|0|A|462
4V9F|1|0|A|463
4V9F|1|0|G|464
4V9F|1|0|U|465
4V9F|1|0|A|466
4V9F|1|0|G|467
*
4V9F|1|0|C|474
4V9F|1|0|G|475
4V9F|1|0|A|476
4V9F|1|0|A|477
4V9F|1|0|C|478
4V9F|1|0|G|479
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain C
- 50S ribosomal protein L4P
- Chain T
- 50S ribosomal protein L24P
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