J3_1KC8_016
3D structure
- PDB id
- 1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.01 Å
Loop
- Sequence
- CCGGUC*GGAAA*UG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KC8_016 not in the Motif Atlas
- Homologous match to J3_4V9F_016
- Geometric discrepancy: 0.0453
- The information below is about J3_4V9F_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
1KC8|1|A|C|1450
1KC8|1|A|C|1451
1KC8|1|A|G|1452
1KC8|1|A|G|1453
1KC8|1|A|U|1454
1KC8|1|A|C|1455
*
1KC8|1|A|G|1490
1KC8|1|A|G|1491
1KC8|1|A|A|1492
1KC8|1|A|A|1493
1KC8|1|A|A|1494
*
1KC8|1|A|U|1511
1KC8|1|A|G|1512
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain T
- RIBOSOMAL PROTEIN L23
Coloring options: