J3_1KD1_003
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAA*UGUUAG*CGUG
- Length
- 13 nucleotides
- Bulged bases
- 1KD1|1|A|U|825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KD1_003 not in the Motif Atlas
- Homologous match to J3_4V9F_003
- Geometric discrepancy: 0.0424
- The information below is about J3_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69816.1
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
1KD1|1|A|C|789
1KD1|1|A|A|790
1KD1|1|A|A|791
*
1KD1|1|A|U|823
1KD1|1|A|G|824
1KD1|1|A|U|825
1KD1|1|A|U|826
1KD1|1|A|A|827
1KD1|1|A|G|828
*
1KD1|1|A|C|853
1KD1|1|A|G|854
1KD1|1|A|U|855
1KD1|1|A|G|856
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 1
- RIBOSOMAL PROTEIN L37Ae
- Chain C
- RIBOSOMAL PROTEIN L2
- Chain Q
- RIBOSOMAL PROTEIN L19E
Coloring options: