J3_1KD1_006
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UAAG*CGAGAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 1KD1|1|A|G|1683, 1KD1|1|A|A|1684
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KD1_006 not in the Motif Atlas
- Homologous match to J3_4V9F_006
- Geometric discrepancy: 0.0312
- The information below is about J3_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
1KD1|1|A|U|1412
1KD1|1|A|A|1413
1KD1|1|A|A|1414
1KD1|1|A|G|1415
*
1KD1|1|A|C|1680
1KD1|1|A|G|1681
1KD1|1|A|A|1682
1KD1|1|A|G|1683
1KD1|1|A|A|1684
1KD1|1|A|A|1685
1KD1|1|A|C|1686
*
1KD1|1|A|G|1695
1KD1|1|A|U|1696
1KD1|1|A|G|1697
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 2
- RIBOSOMAL PROTEIN L37E
- Chain 3
- RIBOSOMAL PROTEIN L39E
- Chain Q
- RIBOSOMAL PROTEIN L19E
Coloring options: