J3_1KD1_007
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCUG*CUCAC*GGACACC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KD1_007 not in the Motif Atlas
- Homologous match to J3_4V9F_007
- Geometric discrepancy: 0.048
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
1KD1|1|A|G|2131
1KD1|1|A|C|2132
1KD1|1|A|U|2133
1KD1|1|A|G|2134
*
1KD1|1|A|C|2241
1KD1|1|A|U|2242
1KD1|1|A|C|2243
1KD1|1|A|A|2244
1KD1|1|A|C|2245
*
1KD1|1|A|G|2256
1KD1|1|A|G|2257
1KD1|1|A|A|2258
1KD1|1|A|C|2259
1KD1|1|A|A|2260
1KD1|1|A|C|2261
1KD1|1|A|C|2262
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN L2
- Chain N
- RIBOSOMAL PROTEIN L15E
Coloring options: