J3_1KD1_008
3D structure
- PDB id
- 1KD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 1KD1|1|A|A|2368
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1KD1_008 not in the Motif Atlas
- Homologous match to J3_4V9F_008
- Geometric discrepancy: 0.0405
- The information below is about J3_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
1KD1|1|A|C|2329
1KD1|1|A|U|2330
1KD1|1|A|C|2331
*
1KD1|1|A|G|2355
1KD1|1|A|A|2356
1KD1|1|A|G|2357
*
1KD1|1|A|C|2366
1KD1|1|A|A|2367
1KD1|1|A|A|2368
1KD1|1|A|A|2369
1KD1|1|A|A|2370
1KD1|1|A|G|2371
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- RIBOSOMAL PROTEIN L5
- Chain O
- RIBOSOMAL PROTEIN L18
- Chain R
- RIBOSOMAL PROTEIN L21E
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